PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02974g03004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 285aa    MW: 33072.3 Da    PI: 6.5256
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02974g03004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.31.3e-151151343
                              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                              i+++  r+ tf kR++g++KK +ELS+LCd+++++ii  s+
  Peinf101Scf02974g03004.1 11 IQDHKTRKNTFLKRKAGLIKKISELSILCDIKACLIINDSH 51
                              889999******************************97665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.381147IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-15160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-18298IPR002100Transcription factor, MADS-box
CDDcd002661.68E-17247No hitNo description
PRINTSPR004042.1E-9323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-141152IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGKSRVKLEL IQDHKTRKNT FLKRKAGLIK KISELSILCD IKACLIINDS HQEYIDGVEQ  60
QEIWPADSNQ VQELINLYKQ QPVGNQRKRT ENLSSFIENQ KRKVASEMEK LKTKRIKTTE  120
KYCTWDSRFN YLSEKELRNF ASVLEKKIEN MKRKLEVSKS TTNIQDSNMG SLDSQEEWDY  180
PELSNQTPCP INLNGDNIPF TYNNFFQEFT TSDFQITPSV GVNSVDYGYD LTVGNYQFGD  240
AENNWLMKHE IGGGECYNFG SSSMTMQQQQ QQQLMELLKI GVPFH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009598741.12e-73PREDICTED: agamous-like MADS-box protein AGL92
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63421232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.22e-19AGAMOUS-like 87